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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1500253_1501652_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1500253 - 1501652
Intron Length:
1400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTCCTTTTAATG
Flanking Amino Acid:
YGCMDSNSSTCLEATDLSWR
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
84.9
26.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.8
0.81
0.8
80
37.5
Minor 5ss
34
-1.8
2.8
39.2
40.5
Minor BPS
57.7
0.1
1.3
56.54
39.7

Associated Gene:

Gene:
PGAP1
Ensembl Gene ID:
ENSAPLG00000001884
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002050
1483555 - 1514174
30620