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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1501705_1501902_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1501705 - 1501902
Intron Length:
198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTATTTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTTTTCTATTT
Flanking Amino Acid:
WRAELLPTIRVVILKLQDYP
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81.5
32.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
77.9
0.63
1
82.8
32.4
Minor 5ss
35.8
-1.6
3.3
40.8
45.4
Minor BPS
54.8
0.23
1.9
79.65
37.1

Associated Gene:

Gene:
PGAP1
Ensembl Gene ID:
ENSAPLG00000001884
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002050
1483555 - 1514174
30620