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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15032068_15063542_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15032068 - 15063542
Intron Length:
31475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTACTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TGTCCCTTTACT
Flanking Amino Acid:
EACGHGLQSRAVTCLSETNE
Intron Amino Acid Position:
786

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
78.8
38.3
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
84.3
0.77
0.8
81.4
30.2
Minor 5ss
49.3
-0
2.8
65.3
45.9
Minor BPS
72.7
0.8
1.6
87.18
37.7

Associated Gene:

Gene:
THSD7B
Ensembl Gene ID:
ENSAPLG00000002773
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002818
14956985 - 15160804
203820