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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1505632_1506699_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1505632 - 1506699
Intron Length:
1068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTTCTTATAT
Flanking Amino Acid:
KTSFLQILGQIIRFHAGALP
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
83.5
27.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83.4
0.75
0.8
80.3
31.8
Minor 5ss
36.9
-1.5
3.1
49.9
40.5
Minor BPS
63.7
0.51
1.7
80.66
41.2

Associated Gene:

Gene:
PGAP1
Ensembl Gene ID:
ENSAPLG00000001884
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002050
1483555 - 1514174
30620