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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15199577_15199665_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15199577 - 15199665
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
CGTCTGTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
GTGTTCCTAATG
Flanking Amino Acid:
VPDGIIQFIKLCTVSYGKVK
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
78.8
0.65
0.9
72.2
37.8
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
55
0.02
1.8
60.27
41.9

Associated Gene:

Gene:
ERCC3
Ensembl Gene ID:
ENSAPLG00000012068
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012566
15174356 - 15220522
46167