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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15200402_15200605_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15200402 - 15200605
Intron Length:
204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTACGTGTG
5'SS Class:
major
3'SS Sequence:
CTTTCTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
GATCCCTTAGGT
Flanking Amino Acid:
ITETFTSKSAISKSSEGGFG
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
67.6
43.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
87.4
0.84
0.7
85.3
27.7
Minor 5ss
35.7
-1.6
3.5
49.2
47
Minor BPS
54.2
0.21
1.9
71.93
44.2

Associated Gene:

Gene:
ERCC3
Ensembl Gene ID:
ENSAPLG00000012068
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012566
15174356 - 15220522
46167