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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15200771_15201821_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15200771 - 15201821
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGAGCA
5'SS Class:
major
3'SS Sequence:
GTCTCCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
ACCATCTGAAGC
Flanking Amino Acid:
TQTVSFEVKQEMIEELQKRC
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
65
34.8
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
76
0.59
0.8
73.2
31.7
Minor 5ss
24.2
-3
3.2
30.5
42.8
Minor BPS
45.7
-0.3
1.7
49.5
40.9

Associated Gene:

Gene:
ERCC3
Ensembl Gene ID:
ENSAPLG00000012068
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012566
15174356 - 15220522
46167