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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15207599_15210930_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15207599 - 15210930
Intron Length:
3332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
ALKEYAIRLGKPYIYGPTAQ
Intron Amino Acid Position:
590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
88.1
25.2
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
40.3
-1.1
3.4
58.5
40.4
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
ERCC3
Ensembl Gene ID:
ENSAPLG00000012068
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012566
15174356 - 15220522
46167