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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15211339_15214572_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15211339 - 15214572
Intron Length:
3234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATGGAATTAATC
Flanking Amino Acid:
RLGRVLRAKKGMVAEEYNAF
Intron Amino Acid Position:
662

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
74.7
35.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.8
0.6
0.8
69.5
36.8
Minor 5ss
31.4
-2.1
3.2
39.6
46.4
Minor BPS
48.2
-0.1
1.8
58.81
40.2

Associated Gene:

Gene:
ERCC3
Ensembl Gene ID:
ENSAPLG00000012068
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012566
15174356 - 15220522
46167