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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15233412_15235011_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15233412 - 15235011
Intron Length:
1600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TAATTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AAATTAATAATT
Flanking Amino Acid:
LRGRATGLISAEGEQWLKMR
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.4
67.1
44.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
80.8
0.69
0.8
74
41.1
Minor 5ss
35.3
-1.7
3.3
44.7
43.5
Minor BPS
48.6
-0
1.8
66.7
37.4

Associated Gene:

Gene:
CYP27C1
Ensembl Gene ID:
ENSAPLG00000012186
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012710
15228507 - 15244804
16298