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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15238427_15240583_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15238427 - 15240583
Intron Length:
2157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGCTTG
5'SS Class:
major
3'SS Sequence:
GTTTCTTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TTGGACTTCATG
Flanking Amino Acid:
TEMLLAGVDTTSFTLSWATY
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
63.8
43.3
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
78.7
0.65
0.7
77.7
31.1
Minor 5ss
49.7
-0
2.8
70.2
41.2
Minor BPS
46.8
-0.3
2.1
55.62
46.1

Associated Gene:

Gene:
CYP27C1
Ensembl Gene ID:
ENSAPLG00000012186
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012710
15228507 - 15244804
16298