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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15240751_15241525_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15240751 - 15241525
Intron Length:
775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTGTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
ATTCTCTTAAAT
Flanking Amino Acid:
LIRAVLKETLRLYPVLPGNG
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
78.3
0.64
0.9
70.5
40.9
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
72.8
0.79
1.3
85.22
34.1

Associated Gene:

Gene:
CYP27C1
Ensembl Gene ID:
ENSAPLG00000012186
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012710
15228507 - 15244804
16298