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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15241605_15242699_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15241605 - 15242699
Intron Length:
1095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGTTCT
5'SS Class:
major
3'SS Sequence:
TTTATTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TATAAATAAAAT
Flanking Amino Acid:
IVGGYLIPKGTQLALCHYAT
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
72.3
40.1
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
86.3
0.82
0.7
85.7
28.8
Minor 5ss
41
-1
3.1
50.4
46
Minor BPS
44.3
-0.3
2.1
66.07
43.3

Associated Gene:

Gene:
CYP27C1
Ensembl Gene ID:
ENSAPLG00000012186
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012710
15228507 - 15244804
16298