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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15242904_15244687_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15242904 - 15244687
Intron Length:
1784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
GCTTTCCTAATA
Flanking Amino Acid:
ELEIHLALIQLLQNFEIKVS
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1.1
81.9
31
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
85.4
0.8
0.7
80.6
31.5
Minor 5ss
31.5
-2.1
2.8
40.7
45.1
Minor BPS
59.8
0.3
1.7
68.19
38.5

Associated Gene:

Gene:
CYP27C1
Ensembl Gene ID:
ENSAPLG00000012186
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012710
15228507 - 15244804
16298