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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15263356_15298277_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15263356 - 15298277
Intron Length:
34922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAAGGG
5'SS Class:
major
3'SS Sequence:
TCTCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAA
U12 Branch Point Sequence:
TGTGTTTGAAGT
Flanking Amino Acid:
QKKLTRAQEKVLQKLGKADE
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
59.2
40
Major BPS
69.4
0.48
1.2
63.4
44.3
Major PPT
88.6
0.87
0.6
84.3
23.6
Minor 5ss
23.7
-3
3.1
29.4
43.3
Minor BPS
48.9
-0
1.8
68.54
42.7

Associated Gene:

Gene:
BIN1
Ensembl Gene ID:
ENSAPLG00000012452
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030635
15263272 - 15348542
85271
ENSAPLT00000013045
15263272 - 15349189
85918
ENSAPLT00000045906
15262888 - 15349189
86302
ENSAPLT00000042182
15263272 - 15349189
85918
ENSAPLT00000033997
15262888 - 15349189
86302