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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1528430_1529491_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1528430 - 1529491
Intron Length:
1062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGAG
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TTGCCCTTTTTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
68.4
36.7
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
82.5
0.73
0.7
79.8
25.7
Minor 5ss
29.1
-2.4
3.4
37.5
47.2
Minor BPS
42.7
-0.5
3.6
73.22
43.8

Associated Gene:

Gene:
GTF3C3
Ensembl Gene ID:
ENSAPLG00000016020
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016753
1527231 - 1551604
24374