About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15298359_15305197_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15298359 - 15305197
Intron Length:
6839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CTTGTTTTCACA
Flanking Amino Acid:
QCVQNFNKQLSEGTRLQKDL
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
75.7
29.2
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
84.1
0.77
0.8
79.2
32.9
Minor 5ss
37.4
-1.4
3
44.1
44.7
Minor BPS
51.7
0.05
1.9
65.59
41.9

Associated Gene:

Gene:
BIN1
Ensembl Gene ID:
ENSAPLG00000012452
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033997
15262888 - 15349189
86302
ENSAPLT00000030635
15263272 - 15348542
85271
ENSAPLT00000013045
15263272 - 15349189
85918
ENSAPLT00000045906
15262888 - 15349189
86302
ENSAPLT00000042182
15263272 - 15349189
85918