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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15305253_15305648_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15305253 - 15305648
Intron Length:
396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAC
U12 Branch Point Sequence:
GTTTCCCCATTT
Flanking Amino Acid:
DLRTYLASVKAMHEASKKLT
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
27.6
Major BPS
66.4
0.41
1
59
37.6
Major PPT
82.6
0.73
0.7
76.7
32
Minor 5ss
38.2
-1.3
3
48.6
47.1
Minor BPS
48.6
-0
2.1
74.08
42.6

Associated Gene:

Gene:
BIN1
Ensembl Gene ID:
ENSAPLG00000012452
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042182
15263272 - 15349189
85918
ENSAPLT00000033997
15262888 - 15349189
86302
ENSAPLT00000030635
15263272 - 15348542
85271
ENSAPLT00000013045
15263272 - 15349189
85918
ENSAPLT00000045906
15262888 - 15349189
86302