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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15307789_15311804_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15307789 - 15311804
Intron Length:
4016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
CCATCTTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTCTCCATCT
Flanking Amino Acid:
TYLGQFPDIKSRIAKRGRKL
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
78.8
29.4
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
77.3
0.61
0.8
72.6
31.8
Minor 5ss
44.2
-0.6
3.1
60.1
38.6
Minor BPS
51.2
0.12
2.1
80.99
40.7

Associated Gene:

Gene:
BIN1
Ensembl Gene ID:
ENSAPLG00000012452
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030635
15263272 - 15348542
85271
ENSAPLT00000013045
15263272 - 15349189
85918
ENSAPLT00000045906
15262888 - 15349189
86302
ENSAPLT00000042182
15263272 - 15349189
85918
ENSAPLT00000033997
15262888 - 15349189
86302