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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15311913_15314591_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15311913 - 15314591
Intron Length:
2679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCAA
5'SS Class:
major
3'SS Sequence:
TCCCTCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAAACAT
U12 Branch Point Sequence:
TTTCCCTCAAAC
Flanking Amino Acid:
KKKDETKIAKPVSLLEKAAP
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
68.2
38.4
Major BPS
50.9
0.02
1.1
59
36.1
Major PPT
73.8
0.54
0.7
65.3
30.6
Minor 5ss
29.4
-2.4
3.3
37.9
46.9
Minor BPS
66.4
0.49
1.7
78.17
36.6

Associated Gene:

Gene:
BIN1
Ensembl Gene ID:
ENSAPLG00000012452
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033997
15262888 - 15349189
86302
ENSAPLT00000013045
15263272 - 15349189
85918
ENSAPLT00000045906
15262888 - 15349189
86302
ENSAPLT00000042182
15263272 - 15349189
85918