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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15318814_15320491_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15318814 - 15320491
Intron Length:
1678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTTCATT
Flanking Amino Acid:
LQEELPSLWNSRVGFYVNTF
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
100
1.24
0.5
100
0
Major PPT
79.5
0.66
1
76.8
37
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
60.5
0.41
1.7
78.42
39.1

Associated Gene:

Gene:
BIN1
Ensembl Gene ID:
ENSAPLG00000012452
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033997
15262888 - 15349189
86302
ENSAPLT00000030635
15263272 - 15348542
85271
ENSAPLT00000013045
15263272 - 15349189
85918
ENSAPLT00000045906
15262888 - 15349189
86302
ENSAPLT00000042182
15263272 - 15349189
85918