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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15330407_15334124_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15330407 - 15334124
Intron Length:
3718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGTCC
5'SS Class:
major
3'SS Sequence:
CACTTGCATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GTGTGCTCACTT
Flanking Amino Acid:
GASIPKSPSQLRKGPPVPPP
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
60.3
39.6
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
68.7
0.42
1
61.9
38.7
Minor 5ss
36.7
-1.5
3.5
50.9
45.8
Minor BPS
45.5
-0.2
2.2
64.51
46.2

Associated Gene:

Gene:
BIN1
Ensembl Gene ID:
ENSAPLG00000012452
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033997
15262888 - 15349189
86302
ENSAPLT00000030635
15263272 - 15348542
85271
ENSAPLT00000013045
15263272 - 15349189
85918
ENSAPLT00000045906
15262888 - 15349189
86302