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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1533247_1533655_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1533247 - 1533655
Intron Length:
409

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
GCATCATTGATA
Flanking Amino Acid:
LNRETKKMMKERRPRSKLPR
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.7
100
0
Major BPS
70.2
0.5
1
72.1
33
Major PPT
79.5
0.66
0.8
78.5
29.2
Minor 5ss
31.3
-2.1
4
50.6
45.9
Minor BPS
54.7
0.14
1.6
60.9
39

Associated Gene:

Gene:
GTF3C3
Ensembl Gene ID:
ENSAPLG00000016020
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016753
1527231 - 1551604
24374