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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15342949_15343744_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15342949 - 15343744
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCCTC
5'SS Class:
major
3'SS Sequence:
TGCTGCCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TTTTCCTTTCCT
Flanking Amino Acid:
ASKTEADSGSTSLPAVVVET
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
67.4
44
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
77.5
0.62
0.9
73.3
37.2
Minor 5ss
42.9
-0.8
3.1
60.8
43.7
Minor BPS
51.2
0.12
3.7
92.33
36.7

Associated Gene:

Gene:
BIN1
Ensembl Gene ID:
ENSAPLG00000012452
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030635
15263272 - 15348542
85271
ENSAPLT00000013045
15263272 - 15349189
85918
ENSAPLT00000045906
15262888 - 15349189
86302
ENSAPLT00000042182
15263272 - 15349189
85918
ENSAPLT00000033997
15262888 - 15349189
86302