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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15344592_15345802_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15344592 - 15345802
Intron Length:
1211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGCACTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
AGTTTTTCAATG
Flanking Amino Acid:
VIPFENPEEQLDVGATAMNS
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
69.8
0.44
0.9
60.2
41.5
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
54.2
-0
1.5
58.12
38.1

Associated Gene:

Gene:
BIN1
Ensembl Gene ID:
ENSAPLG00000012452
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042182
15263272 - 15349189
85918
ENSAPLT00000030635
15263272 - 15348542
85271
ENSAPLT00000013045
15263272 - 15349189
85918