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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15345854_15348298_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15345854 - 15348298
Intron Length:
2445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCTCT
5'SS Class:
major
3'SS Sequence:
TTTTTTCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
AGTGCCTGATCT
Flanking Amino Acid:
MNSRLSKLQRDEGWLMGVKE
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
68.4
39.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
88.4
0.86
0.6
82.3
29.8
Minor 5ss
40.6
-1
3
48.7
47
Minor BPS
52.9
0.17
1.9
72.32
44.1

Associated Gene:

Gene:
BIN1
Ensembl Gene ID:
ENSAPLG00000012452
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042182
15263272 - 15349189
85918
ENSAPLT00000030635
15263272 - 15348542
85271
ENSAPLT00000013045
15263272 - 15349189
85918