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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15387976_15389617_F

Intron Information:

Intron Rank:
125420
Intron Class:
major
Intron Phase:
Intron Coordinates:
15387976 - 15389617
Intron Length:
1642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCACT
5'SS Class:
strong_major
3'SS Sequence:
TAATTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGGGATTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
77.1
37.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.1
0.75
0.8
77.7
36.1
Minor 5ss
48.1
-0.2
2.5
67.2
43.7
Minor BPS
55.5
0.25
1.6
69.09
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017579
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029114
15387853 - 15393641
5789