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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1544361_1544694_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1544361 - 1544694
Intron Length:
334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGAAT
5'SS Class:
major
3'SS Sequence:
TTTCATTCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CATTTACTAATT
Flanking Amino Acid:
KNFRKAYNYIRIMVMENVNK
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
74.7
37
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
82
0.72
0.7
77.1
31.4
Minor 5ss
27.1
-2.6
3.3
38.2
47
Minor BPS
49.6
0.05
1.9
70.61
40.4

Associated Gene:

Gene:
GTF3C3
Ensembl Gene ID:
ENSAPLG00000016020
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016753
1527231 - 1551604
24374