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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15484045_15484709_F

Intron Information:

Intron Rank:
148338
Intron Class:
major
Intron Phase:
Intron Coordinates:
15484045 - 15484709
Intron Length:
665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAGAA
5'SS Class:
major
3'SS Sequence:
GTTTTATTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTTATTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
64
36.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82.3
0.73
0.8
76.6
36.5
Minor 5ss
28.5
-2.5
3.5
34.1
44.1
Minor BPS
55.5
0.17
2
72.91
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029856
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030537
15483363 - 15487198
3836