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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1549624_1551129_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
1549624 - 1551129
Intron Length:
1506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAGTG
5'SS Class:
major
3'SS Sequence:
TTTCTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
CACATCTTACCC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
63.2
41.7
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
92.8
0.96
0.6
88.6
20.9
Minor 5ss
32
-2.1
3.8
46.1
49.1
Minor BPS
49.4
-0
1.7
55.27
43.1

Associated Gene:

Gene:
GTF3C3
Ensembl Gene ID:
ENSAPLG00000016020
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016753
1527231 - 1551604
24374