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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1557076_1557651_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1557076 - 1557651
Intron Length:
576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
CGACAACTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CTTTCGACAACT
Flanking Amino Acid:
VTKANAGGIKEIETELREIE
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
63.1
0.29
1
51.1
42.5
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
48.2
-0
2.5
77.18
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015999
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016696
1555073 - 1561538
6466