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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1557792_1559155_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1557792 - 1559155
Intron Length:
1364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTCAGCATT
5'SS Class:
weak_major
3'SS Sequence:
AAATTTGCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
ATCCTCCAAATT
Flanking Amino Acid:
QQLVLFTVLIFSHANRDLQQ
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57
0.17
1.4
66
45.2
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
69.9
0.45
1
62.9
43.1
Minor 5ss
43.6
-0.7
3
68.6
41.7
Minor BPS
46
-0.2
1.9
63.76
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015999
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016696
1555073 - 1561538
6466