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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15635892_15638518_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15635892 - 15638518
Intron Length:
2627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
ACCTTTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATGCATTTAACT
Flanking Amino Acid:
SAGADVAVIGGVIAAVVFVL
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.4
0.62
0.8
69.7
36.1
Minor 5ss
36.1
-1.6
2.7
45.8
42.3
Minor BPS
64
0.52
1.5
76.94
39.3

Associated Gene:

Gene:
GYPC
Ensembl Gene ID:
ENSAPLG00000013213
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013758
15634695 - 15665141
30447
ENSAPLT00000046604
15635695 - 15680420
44726
ENSAPLT00000023748
15635695 - 15680420
44726