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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15794461_15811783_F

Intron Information:

Intron Rank:
134457
Intron Class:
major
Intron Phase:
Intron Coordinates:
15794461 - 15811783
Intron Length:
17323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTATA
5'SS Class:
major
3'SS Sequence:
CTTATGTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TTCTGTTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
80.9
32.8
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
75.3
0.57
0.9
69.7
36.6
Minor 5ss
41.8
-0.9
2.5
51.7
44.8
Minor BPS
56.7
0.29
2.1
78.9
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022263
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029119
15792053 - 15813070
21018