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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15811895_15812788_F

Intron Information:

Intron Rank:
134458
Intron Class:
major
Intron Phase:
Intron Coordinates:
15811895 - 15812788
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGCATA
5'SS Class:
major
3'SS Sequence:
CTTTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TCTGGCTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
71
40.9
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
89.3
0.88
0.6
84.3
23.5
Minor 5ss
44.9
-0.5
2.9
58.5
45.8
Minor BPS
64.7
0.46
1.9
74.7
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022263
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029119
15792053 - 15813070
21018