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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_15953391_15959103_F

Intron Information:

Intron Rank:
132653
Intron Class:
major
Intron Phase:
Intron Coordinates:
15953391 - 15959103
Intron Length:
5713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
AAATTTCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
ATTTTCCAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
77.3
0.68
1
81.5
27
Major PPT
73.9
0.54
0.9
71.1
39.7
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
54.7
0.23
2
78.43
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021283
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045962
15937721 - 15960019
22299