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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16051485_16052404_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16051485 - 16052404
Intron Length:
920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTTCA
5'SS Class:
strong_major
3'SS Sequence:
TACCCCTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CCTTTTTTACCC
Flanking Amino Acid:
AVRSDSAVIGGVIAVVIFII
Intron Amino Acid Position:
1128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.7
33.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
77
0.61
0.8
73.4
31.1
Minor 5ss
46
-0.4
2.5
59.7
44.7
Minor BPS
57.8
0.22
1.6
64.58
42.1

Associated Gene:

Gene:
CNTNAP5
Ensembl Gene ID:
ENSAPLG00000013229
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013815
16051288 - 16246317
195030
ENSAPLT00000046002
16051288 - 16328713
277426
ENSAPLT00000037460
16051288 - 16447263
395976
ENSAPLT00000031140
16051288 - 16328713
277426