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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16057619_16068158_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16057619 - 16068158
Intron Length:
10540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTAAAAC
U12 Branch Point Sequence:
AATCCCCAGACT
Flanking Amino Acid:
TKSLTLGKVTDSLSLDPEVS
Intron Amino Acid Position:
1031

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.9
29.3
Major BPS
49.3
-0
1.1
57
34.5
Major PPT
76.2
0.59
1
69.6
41.6
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
48
-0
2
69.11
41.2

Associated Gene:

Gene:
CNTNAP5
Ensembl Gene ID:
ENSAPLG00000013229
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013815
16051288 - 16246317
195030
ENSAPLT00000046002
16051288 - 16328713
277426
ENSAPLT00000037460
16051288 - 16447263
395976
ENSAPLT00000031140
16051288 - 16328713
277426