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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16069719_16083133_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16069719 - 16083133
Intron Length:
13415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTATAGAATC
Flanking Amino Acid:
EYLAVILSKNGSLQVRYKLS
Intron Amino Acid Position:
959

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
71.5
0.48
1
74.7
33.9
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
49.6
-0
1.9
69.29
35.9

Associated Gene:

Gene:
CNTNAP5
Ensembl Gene ID:
ENSAPLG00000013229
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031140
16051288 - 16328713
277426
ENSAPLT00000013815
16051288 - 16246317
195030
ENSAPLT00000046509
16064266 - 16328713
264448
ENSAPLT00000037460
16051288 - 16447263
395976