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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16083359_16084964_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16083359 - 16084964
Intron Length:
1606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCAGA
5'SS Class:
major
3'SS Sequence:
TATGTGCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
CTTGGTTTATAT
Flanking Amino Acid:
SAYEGPFCKKEVSALFEAGT
Intron Amino Acid Position:
884

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
43.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
78
0.63
0.9
73.8
41.4
Minor 5ss
37.4
-1.4
3.1
48.6
47.2
Minor BPS
44.8
-0.3
2.1
64.12
46.6

Associated Gene:

Gene:
CNTNAP5
Ensembl Gene ID:
ENSAPLG00000013229
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037460
16051288 - 16447263
395976
ENSAPLT00000031140
16051288 - 16328713
277426
ENSAPLT00000013815
16051288 - 16246317
195030
ENSAPLT00000046509
16064266 - 16328713
264448