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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16085205_16091130_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16085205 - 16091130
Intron Length:
5926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTAAAT
U12 Branch Point Sequence:
TCATCAGTAAAT
Flanking Amino Acid:
RLQLNSQLFVGGTASRQKGF
Intron Amino Acid Position:
804

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
73
34.7
Major BPS
58.4
0.21
1.2
65
38.7
Major PPT
90
0.9
0.6
88.4
21.2
Minor 5ss
32.1
-2
3.3
43.2
44.2
Minor BPS
48.1
-0
2.3
71.4
44.9

Associated Gene:

Gene:
CNTNAP5
Ensembl Gene ID:
ENSAPLG00000013229
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013815
16051288 - 16246317
195030
ENSAPLT00000046509
16064266 - 16328713
264448
ENSAPLT00000046002
16051288 - 16328713
277426
ENSAPLT00000037460
16051288 - 16447263
395976
ENSAPLT00000031140
16051288 - 16328713
277426