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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16103102_16129759_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16103102 - 16129759
Intron Length:
26658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTCATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CCCCCTTTCATC
Flanking Amino Acid:
CRKSRLLNTPNGMPFAWWVG
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
81.6
29.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
76.7
0.6
0.9
69
36.1
Minor 5ss
38.7
-1.3
2.7
47.6
34.4
Minor BPS
47.2
-0.2
1.7
50.34
41.6

Associated Gene:

Gene:
CNTNAP5
Ensembl Gene ID:
ENSAPLG00000013229
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013815
16051288 - 16246317
195030
ENSAPLT00000046509
16064266 - 16328713
264448
ENSAPLT00000046002
16051288 - 16328713
277426
ENSAPLT00000037460
16051288 - 16447263
395976
ENSAPLT00000031140
16051288 - 16328713
277426