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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16129961_16142993_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16129961 - 16142993
Intron Length:
13033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGACC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAA
U12 Branch Point Sequence:
GTTTGTTTAACA
Flanking Amino Acid:
GPLQVFCNITEDKIWTAVQH
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
72.4
37.1
Major BPS
65.6
0.39
0.9
67.3
29.6
Major PPT
77.9
0.63
1
73.3
40.9
Minor 5ss
33.6
-1.9
3.1
44.3
43.2
Minor BPS
70.4
0.64
1.7
79.83
36.4

Associated Gene:

Gene:
CNTNAP5
Ensembl Gene ID:
ENSAPLG00000013229
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013815
16051288 - 16246317
195030
ENSAPLT00000046509
16064266 - 16328713
264448
ENSAPLT00000046002
16051288 - 16328713
277426
ENSAPLT00000037460
16051288 - 16447263
395976
ENSAPLT00000031140
16051288 - 16328713
277426