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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16155320_16171737_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16155320 - 16171737
Intron Length:
16418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTGACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CATTTTTTAAAT
Flanking Amino Acid:
LHIDLCGIKDRCLPNYCEHG
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69
0.43
1
62.7
43
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
67.5
0.63
1.4
77.65
38.8

Associated Gene:

Gene:
CNTNAP5
Ensembl Gene ID:
ENSAPLG00000013229
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031140
16051288 - 16328713
277426
ENSAPLT00000013815
16051288 - 16246317
195030
ENSAPLT00000046509
16064266 - 16328713
264448
ENSAPLT00000046002
16051288 - 16328713
277426
ENSAPLT00000037460
16051288 - 16447263
395976