Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16171910_16172951_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16171910 - 16172951

Intron Length:

1042

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTTGT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCCCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCCAAT

U12 Branch Point Sequence:

TTTTTTCCCACA

Flanking Amino Acid:

IYSGNSYYFGGCPDNFTDSQ

Intron Amino Acid Position:

379

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.5

1.1

0.7

87.9

29.3

Major BPS

71.8

0.54

1.2

32.5

Major PPT

88.7

0.87

0.6

84.5

23.5

Minor 5ss

41.9

-0.9

2.9

58.7

45.8

Minor BPS

45.8

-0.3

2.2

67.52

39.2

Associated Gene:

Gene:

CNTNAP5

Ensembl Gene ID:

ENSAPLG00000013229

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013815

16051288 - 16246317

195030

ENSAPLT00000046509

16064266 - 16328713

264448

ENSAPLT00000046002

16051288 - 16328713

277426

ENSAPLT00000037460

16051288 - 16447263

395976

ENSAPLT00000031140

16051288 - 16328713

277426