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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16173102_16175783_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16173102 - 16175783
Intron Length:
2682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTAT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCTTTCCCA
Flanking Amino Acid:
VTENPVEISEGTNLHDGLWH
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
34.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
90.5
0.91
0.6
84.4
30.5
Minor 5ss
40.9
-1
3.1
58.4
46.1
Minor BPS
46.7
-0.2
3.6
78.6
38.6

Associated Gene:

Gene:
CNTNAP5
Ensembl Gene ID:
ENSAPLG00000013229
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031140
16051288 - 16328713
277426
ENSAPLT00000013815
16051288 - 16246317
195030
ENSAPLT00000046509
16064266 - 16328713
264448
ENSAPLT00000046002
16051288 - 16328713
277426
ENSAPLT00000037460
16051288 - 16447263
395976