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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16187654_16190563_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16187654 - 16190563
Intron Length:
2910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCAAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TGGTAACTAACT
Flanking Amino Acid:
DSDHLDIDYELSFGGIPVPG
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.4
28.8
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
69.5
0.44
1
72.3
31.4
Minor 5ss
32.6
-2
3.1
39.4
46.5
Minor BPS
48.5
-0
2.1
72.29
43.6

Associated Gene:

Gene:
CNTNAP5
Ensembl Gene ID:
ENSAPLG00000013229
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037460
16051288 - 16447263
395976
ENSAPLT00000031140
16051288 - 16328713
277426
ENSAPLT00000013815
16051288 - 16246317
195030
ENSAPLT00000046509
16064266 - 16328713
264448
ENSAPLT00000046002
16051288 - 16328713
277426