About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16190749_16193511_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16190749 - 16193511
Intron Length:
2763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTAATTCTAACA
Flanking Amino Acid:
KGKLSLHINLGDSNLHSTNS
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
74.4
36
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
82.2
0.72
0.8
73.6
37
Minor 5ss
33.3
-1.9
2.8
33.8
41.1
Minor BPS
56.1
0.19
1.7
69.34
36.6

Associated Gene:

Gene:
CNTNAP5
Ensembl Gene ID:
ENSAPLG00000013229
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013815
16051288 - 16246317
195030
ENSAPLT00000046509
16064266 - 16328713
264448
ENSAPLT00000046002
16051288 - 16328713
277426
ENSAPLT00000037460
16051288 - 16447263
395976
ENSAPLT00000031140
16051288 - 16328713
277426