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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16248144_16254515_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16248144 - 16254515
Intron Length:
6372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
CTATCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATCC
Flanking Amino Acid:
PSFAKLNRRDGAGGWSPLYS
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
81.3
33.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.4
0.73
0.8
76.3
32.1
Minor 5ss
42.8
-0.8
3.4
61.3
44.6
Minor BPS
65.6
0.47
1.5
74.42
36.4

Associated Gene:

Gene:
CNTNAP5
Ensembl Gene ID:
ENSAPLG00000013229
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046002
16051288 - 16328713
277426
ENSAPLT00000037460
16051288 - 16447263
395976
ENSAPLT00000031140
16051288 - 16328713
277426
ENSAPLT00000046509
16064266 - 16328713
264448