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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16566330_16569844_F

Intron Information:

Intron Rank:
144021
Intron Class:
major
Intron Phase:
Intron Coordinates:
16566330 - 16569844
Intron Length:
3515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTGTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGTAT
U12 Branch Point Sequence:
TGACACATATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
86.4
28.9
Major BPS
63.7
0.34
1.4
63.7
43.9
Major PPT
81.3
0.7
0.9
76.8
31.7
Minor 5ss
38.4
-1.3
2.7
52.9
43.7
Minor BPS
40.2
-0.6
2.1
57.6
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027627
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045903
16566152 - 16573759
7608